Fiji
Fiji is an image processing package: a “batteries-included” distribution of ImageJ, bundling a lot of plugins which facilitate scientific image analysis.
- weblink: https://fiji.sc/
- installation: all workstations
- starter guide: SLIDESHOW
Ilastik
A simple, user-friendly tool for interactive image classification, segmentation and analysis.
- weblink: http://ilastik.org/
- installation: all workstations
- weblink: https://fiji.sc/
- installation: all workstations
- starter guide: SLIDESHOW
Relion
RELION (for REgularised LIkelihood OptimisatioN, pronounce rely-on) is a stand-alone computer program that employs an empirical Bayesian approach to refinement of (multiple) 3D reconstructions or 2D class averages in electron cryo-microscopy (cryo-EM)